Variant report

Variant	rs6532825
Chromosome Location	chr4:100564970-100564971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516445	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12639930	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641768	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12647188	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13105033	0.95[ASN][1000 genomes]
rs13112253	0.86[CEU][hapmap]
rs13126189	0.95[ASN][1000 genomes]
rs13130949	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1352775	0.91[CEU][hapmap]
rs1491238	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2306985	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3805337	0.95[ASN][1000 genomes]
rs3828543	0.95[ASN][1000 genomes]
rs4699755	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6852647	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7659550	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7698798	0.95[ASN][1000 genomes]
rs881981	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs959247	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs991811	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100561800-100567400	Weak transcription	HSMMtube	muscle
2	chr4:100562400-100565000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:100563400-100565000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:100563400-100565200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr4:100563400-100565800	Enhancers	Adipose Nuclei	Adipose
6	chr4:100563400-100567000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:100563400-100567600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:100563600-100565000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr4:100563600-100565400	Enhancers	Fetal Lung	lung
10	chr4:100563800-100565000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:100563800-100565400	Enhancers	Rectal Smooth Muscle	rectum
12	chr4:100563800-100565600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:100564200-100565600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr4:100564200-100565600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:100564200-100567400	Weak transcription	Pancreas	Pancrea
16	chr4:100564400-100565800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr4:100564400-100567800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr4:100564400-100569400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:100564600-100565000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:100564600-100565000	Enhancers	Psoas Muscle	Psoas
21	chr4:100564600-100565000	Weak transcription	Right Ventricle	heart
22	chr4:100564600-100565200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr4:100564600-100566000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:100564600-100566800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:100564600-100567600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:100564800-100565000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr4:100564800-100565000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:100564800-100565000	Enhancers	Left Ventricle	heart
29	chr4:100564800-100565400	Flanking Active TSS	Liver	Liver
30	chr4:100564800-100565600	Weak transcription	Fetal Heart	heart
31	chr4:100564800-100565800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
32	chr4:100564800-100566000	Weak transcription	Ovary	ovary
33	chr4:100564800-100566800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:100564800-100567400	Active TSS	Skeletal Muscle Female	skeletal muscle

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