Variant report

Variant	rs6533028
Chromosome Location	chr4:78326249-78326250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10010842	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10013386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10015193	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10018010	0.90[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap]
rs10031809	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518179	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap]
rs10518180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11724731	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11933902	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs11941858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11946669	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs12504998	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12505793	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1372784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs1372785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1372786	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1545252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1545253	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17002668	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1837968	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[YRI][hapmap]
rs1962026	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1962605	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2216629	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs2866281	0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866282	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866284	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866285	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28827478	0.82[ASN][1000 genomes]
rs28858493	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36076516	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4359931	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4579146	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs4859492	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859493	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859824	0.84[CHB][hapmap]
rs4859827	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4859829	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859831	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859832	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859833	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4859834	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533029	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs66500830	0.81[AMR][1000 genomes]
rs6817200	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs6825194	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6831412	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs6832575	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6843922	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6856470	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7375525	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs7375603	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs7378081	0.90[CHB][hapmap]
rs7679224	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7699246	0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs894433	0.95[CEU][hapmap]
rs894434	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[YRI][hapmap]
rs9307275	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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