Variant report

Variant	rs6533177
Chromosome Location	chr4:106039325-106039326
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11722422	0.87[ASN][1000 genomes]
rs11736838	0.83[ASN][1000 genomes]
rs12643081	0.83[ASN][1000 genomes]
rs2214406	0.83[ASN][1000 genomes]
rs4699152	0.83[ASN][1000 genomes]
rs6813396	0.83[ASN][1000 genomes]
rs6820799	0.83[ASN][1000 genomes]
rs723534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764274	0.86[EUR][1000 genomes]
rs764275	0.83[ASN][1000 genomes]
rs7654896	0.83[ASN][1000 genomes]
rs7668143	0.86[EUR][1000 genomes]
rs968042	0.83[ASN][1000 genomes]
rs9996395	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106036200-106041600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:106036400-106041600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:106036800-106041600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:106037800-106041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:106038400-106040800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:106038800-106040800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:106039200-106039600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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