Variant report

Variant	rs6533202
Chromosome Location	chr4:106430976-106430977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10026456	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388040	0.82[EUR][1000 genomes]
rs1490599	0.82[EUR][1000 genomes]
rs1490600	0.82[EUR][1000 genomes]
rs1490601	0.82[EUR][1000 genomes]
rs1490602	0.82[EUR][1000 genomes]
rs17584200	0.82[EUR][1000 genomes]
rs2189228	0.82[EUR][1000 genomes]
rs3974414	0.83[EUR][1000 genomes]
rs6533204	0.82[EUR][1000 genomes]
rs6533205	0.82[EUR][1000 genomes]
rs6817760	0.82[EUR][1000 genomes]
rs6853877	0.82[EUR][1000 genomes]
rs7666509	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7686705	0.82[EUR][1000 genomes]
rs7695462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9307304	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9307305	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106430000-106431000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:106430000-106431800	Enhancers	GM12878-XiMat	blood
3	chr4:106430200-106431000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:106430200-106431200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:106430200-106431200	Enhancers	NHEK	skin
6	chr4:106430800-106431200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:106430800-106431200	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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