Variant report

Variant	rs6533216
Chromosome Location	chr4:78629600-78629601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17002807	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78617400-78634400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:78621000-78631200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:78621200-78633200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:78621200-78635800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:78621400-78645800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:78621600-78643800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:78622000-78638800	Weak transcription	NHEK	skin
8	chr4:78622400-78630800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:78622800-78629800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:78623400-78633000	Weak transcription	HSMM	muscle
11	chr4:78623800-78633000	Weak transcription	HSMMtube	muscle
12	chr4:78625000-78631200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:78625000-78638800	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:78625200-78631400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:78626400-78644400	Weak transcription	Placenta	Placenta
16	chr4:78626400-78645200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:78626800-78631200	Weak transcription	Primary T cells from cord blood	blood
18	chr4:78628200-78631400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:78628400-78631800	Weak transcription	Thymus	Thymus
20	chr4:78628400-78632800	Weak transcription	Fetal Lung	lung
21	chr4:78628400-78636800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:78628400-78638200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:78628400-78638800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:78628400-78648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:78628600-78636600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:78628600-78641400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:78629000-78649400	Weak transcription	HMEC	breast
28	chr4:78629200-78676600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:78629400-78631200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:78629400-78633200	Weak transcription	Fetal Thymus	thymus
31	chr4:78629400-78638200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:78629400-78649400	Weak transcription	Spleen	Spleen
33	chr4:78629400-78656200	Weak transcription	Small Intestine	intestine

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