Variant report

Variant	rs6533468
Chromosome Location	chr4:110762952-110762953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10488880	1.00[YRI][hapmap]
rs11940838	1.00[YRI][hapmap]
rs34855585	0.94[AFR][1000 genomes]
rs4698796	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6828254	1.00[AMR][1000 genomes]
rs6829540	1.00[AMR][1000 genomes]
rs7681770	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110742200-110764400	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
4	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
5	chr4:110746400-110764000	Weak transcription	Primary B cells from cord blood	blood
6	chr4:110746800-110767600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:110757800-110772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:110760600-110766800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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