Variant report

Variant	rs6534317
Chromosome Location	chr4:122668849-122668850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2621218	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2621221	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2706783	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4240261	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4342205	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4370153	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4496602	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4629472	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6534319	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6534321	0.89[EUR][1000 genomes]
rs6823686	0.91[EUR][1000 genomes]
rs6830128	0.82[EUR][1000 genomes]
rs7665098	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7690991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv461635	chr4:122633535-122720999	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv595357	chr4:122633535-122720999	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv508309	chr4:122663791-122680645	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122663400-122672800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:122668800-122669000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:122668800-122669000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:122668800-122669000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr4:122668800-122669000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:122668800-122669200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
7	chr4:122668800-122669200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr4:122668800-122669200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:122668800-122669200	Enhancers	Gastric	stomach
10	chr4:122668800-122670000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:122668800-122670200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr4:122668800-122670200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr4:122668800-122670400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:122668800-122670400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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