Variant report

Variant	rs6534426
Chromosome Location	chr4:124948637-124948638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1519226	1.00[AMR][1000 genomes]
rs1519231	1.00[AMR][1000 genomes]
rs1829426	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs962250	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv879879	chr4:124893772-124971109	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124941600-124949200	Weak transcription	Fetal Lung	lung
2	chr4:124941600-124950400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:124946600-124949200	Active TSS	Fetal Muscle Leg	muscle
4	chr4:124946800-124949000	Weak transcription	Fetal Heart	heart
5	chr4:124947000-124948800	Weak transcription	Aorta	Aorta
6	chr4:124947000-124951200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:124947200-124953800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:124948200-124949400	Active TSS	Fetal Muscle Trunk	muscle
9	chr4:124948200-124949600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr4:124948200-124950000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:124948400-124949200	Enhancers	Colon Smooth Muscle	Colon
12	chr4:124948400-124949200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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