Variant report

Variant	rs6534485
Chromosome Location	chr4:126413865-126413866
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10021774	1.00[YRI][hapmap]
rs10025691	1.00[YRI][hapmap]
rs10031471	1.00[YRI][hapmap]
rs10084893	1.00[YRI][hapmap]
rs11932005	1.00[YRI][hapmap]
rs12640965	1.00[YRI][hapmap]
rs12650153	1.00[YRI][hapmap]
rs13144799	1.00[YRI][hapmap]
rs13144803	1.00[YRI][hapmap]
rs1354709	0.87[AFR][1000 genomes]
rs1355159	1.00[YRI][hapmap]
rs1395243	1.00[YRI][hapmap]
rs1396687	1.00[YRI][hapmap]
rs1553714	1.00[YRI][hapmap]
rs1983117	1.00[YRI][hapmap]
rs2036724	1.00[YRI][hapmap]
rs2135427	1.00[YRI][hapmap]
rs2135428	1.00[YRI][hapmap]
rs2135429	1.00[YRI][hapmap]
rs2390835	1.00[YRI][hapmap]
rs2390836	1.00[YRI][hapmap]
rs2390839	1.00[YRI][hapmap]
rs2390840	1.00[YRI][hapmap]
rs2390841	1.00[YRI][hapmap]
rs2893131	1.00[YRI][hapmap]
rs4508902	1.00[YRI][hapmap]
rs4585321	1.00[YRI][hapmap]
rs4834030	1.00[YRI][hapmap]
rs4834034	1.00[YRI][hapmap]
rs4834036	1.00[YRI][hapmap]
rs4834039	1.00[YRI][hapmap]
rs4834041	1.00[YRI][hapmap]
rs4834043	1.00[YRI][hapmap]
rs4834047	1.00[YRI][hapmap]
rs4996182	1.00[YRI][hapmap]
rs6534480	1.00[YRI][hapmap]
rs6534484	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6814158	0.87[AFR][1000 genomes]
rs6833240	1.00[YRI][hapmap]
rs6850220	1.00[YRI][hapmap]
rs6851018	1.00[YRI][hapmap]
rs7667605	1.00[YRI][hapmap]
rs7668690	1.00[YRI][hapmap]
rs7675556	1.00[YRI][hapmap]
rs7683955	1.00[YRI][hapmap]
rs7699122	1.00[YRI][hapmap]
rs958415	1.00[YRI][hapmap]
rs958845	1.00[YRI][hapmap]
rs988314	1.00[YRI][hapmap]
rs988863	1.00[YRI][hapmap]
rs988933	1.00[YRI][hapmap]
rs9968423	1.00[YRI][hapmap]
rs9991326	1.00[YRI][hapmap]
rs9996895	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126356400-126414200	Weak transcription	Osteobl	bone
2	chr4:126384400-126418000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:126401400-126426000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:126402200-126416000	Weak transcription	HSMMtube	muscle
5	chr4:126402800-126414200	Weak transcription	Pancreas	Pancrea
6	chr4:126405000-126415000	Weak transcription	HSMM	muscle
7	chr4:126409800-126414200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:126410400-126417600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:126410600-126414600	Weak transcription	Fetal Heart	heart
10	chr4:126411200-126417800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:126412200-126415200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:126412200-126417600	Weak transcription	Fetal Brain Male	brain
13	chr4:126412400-126414000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:126412400-126414000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:126412400-126414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:126412400-126414000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:126412400-126421800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:126412600-126414000	Weak transcription	Adipose Nuclei	Adipose
19	chr4:126412600-126414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:126412600-126414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:126412600-126414200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:126412600-126414200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:126412600-126414200	Weak transcription	Liver	Liver
24	chr4:126412600-126414200	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:126412600-126416200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:126412800-126414400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:126412800-126414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:126412800-126414400	Weak transcription	Aorta	Aorta
29	chr4:126412800-126414400	Weak transcription	Brain Germinal Matrix	brain
30	chr4:126412800-126414400	Weak transcription	Brain Substantia Nigra	brain
31	chr4:126412800-126414400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:126412800-126414400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:126412800-126414400	Weak transcription	Fetal Intestine Large	intestine
34	chr4:126412800-126414400	Weak transcription	Fetal Intestine Small	intestine
35	chr4:126412800-126414400	Weak transcription	Ovary	ovary
36	chr4:126412800-126414400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:126412800-126414400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:126412800-126414400	Weak transcription	Spleen	Spleen
39	chr4:126412800-126414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:126412800-126414600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:126412800-126414600	Weak transcription	Right Ventricle	heart
42	chr4:126412800-126415800	Weak transcription	Left Ventricle	heart
43	chr4:126413000-126414600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:126413000-126414600	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:126413000-126414800	Weak transcription	HUVEC	blood vessel
46	chr4:126413000-126417400	Weak transcription	Fetal Kidney	kidney
47	chr4:126413000-126417400	Weak transcription	Fetal Stomach	stomach
48	chr4:126413000-126422000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:126413200-126414800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:126413200-126416400	Weak transcription	Stomach Smooth Muscle	stomach

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