Variant report

Variant	rs6535702
Chromosome Location	chr4:150919730-150919731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:150919568..150921696-chr4:151121146..151122863,2	MCF-7	breast:
2	chr4:150919580..150920110-chr4:151163967..151164510,2	MCF-7	breast:
3	chr4:150915171..150917303-chr4:150919210..150921957,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10017759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017833	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10032381	0.83[ASN][1000 genomes]
rs4383598	0.81[JPT][hapmap]
rs4391009	0.90[ASN][1000 genomes]
rs4413385	0.82[AMR][1000 genomes]
rs4600899	0.85[ASN][1000 genomes]
rs4835607	0.85[ASN][1000 genomes]
rs6535703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6816013	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6856601	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150918600-150919800	Enhancers	HMEC	breast
2	chr4:150918800-150919800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:150918800-150919800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:150918800-150919800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:150918800-150919800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:150918800-150919800	Enhancers	HepG2	liver
7	chr4:150918800-150919800	Enhancers	NHEK	skin
8	chr4:150919000-150919800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:150919000-150920000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:150919000-150920200	Enhancers	Liver	Liver
11	chr4:150919200-150919800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:150919200-150919800	Enhancers	Hela-S3	cervix
13	chr4:150919400-150920800	Weak transcription	Brain Anterior Caudate	brain
14	chr4:150919400-150924800	Weak transcription	Ovary	ovary
15	chr4:150919600-150919800	Enhancers	Osteobl	bone
16	chr4:150919600-150920000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr4:150919600-150920200	Weak transcription	NHLF	lung
18	chr4:150919600-150920800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:150919600-150920800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:150919600-150920800	Weak transcription	NHDF-Ad	bronchial
21	chr4:150919600-150921000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:150919600-150921600	Enhancers	A549	lung
23	chr4:150919600-150922800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:150919600-150922800	Weak transcription	HSMM	muscle
25	chr4:150919600-150922800	Weak transcription	NH-A	brain
26	chr4:150919600-150923600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:150919600-150923600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:150919600-150923600	Weak transcription	HSMMtube	muscle
29	chr4:150919600-150923800	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:150919600-150924400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:150919600-150925200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:150919600-150925200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:150919600-150925400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:150919600-150925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:150919600-150925400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:150919600-150927000	Weak transcription	Pancreas	Pancrea
37	chr4:150919600-150931800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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