Variant report

Variant	rs6535730
Chromosome Location	chr4:151264359-151264360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151235648..151237597-chr4:151263231..151266088,2	K562	blood:

Variant related genes	Relation type
ENSG00000198589	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10010954	0.85[GIH][hapmap]
rs10471054	0.81[AMR][1000 genomes]
rs10520063	0.81[AMR][1000 genomes]
rs13132429	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13136928	0.81[AMR][1000 genomes]
rs1459743	0.85[GIH][hapmap]
rs1546417	0.81[AMR][1000 genomes]
rs4458434	0.81[AMR][1000 genomes]
rs4696645	0.82[EUR][1000 genomes]
rs6535729	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535732	0.98[GIH][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes]
rs6535733	0.81[AMR][1000 genomes]
rs6844989	0.82[EUR][1000 genomes]
rs7657948	0.84[AMR][1000 genomes]
rs7659675	0.84[AMR][1000 genomes]
rs7687678	0.84[AMR][1000 genomes]
rs7691809	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151205000-151272200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:151224200-151274800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:151226800-151272400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:151227400-151269400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:151236400-151272600	Weak transcription	Thymus	Thymus
6	chr4:151238200-151270200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:151242600-151268600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:151242800-151273800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:151243000-151277000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:151243000-151277400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
12	chr4:151244200-151300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:151245000-151270400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:151245400-151268200	Weak transcription	Esophagus	oesophagus
15	chr4:151245800-151268000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:151247200-151277000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:151247600-151269800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:151247800-151285200	Weak transcription	GM12878-XiMat	blood
19	chr4:151248000-151268000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr4:151248200-151269800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:151259200-151269400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:151259400-151264400	Weak transcription	K562	blood
23	chr4:151259400-151277000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:151259800-151264600	Weak transcription	Right Ventricle	heart
25	chr4:151259800-151267000	Weak transcription	Left Ventricle	heart
26	chr4:151259800-151267000	Weak transcription	Pancreas	Pancrea
27	chr4:151259800-151268200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:151259800-151269000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:151259800-151269000	Weak transcription	Osteobl	bone
30	chr4:151260000-151266800	Weak transcription	Fetal Intestine Small	intestine
31	chr4:151260000-151280000	Weak transcription	Fetal Stomach	stomach
32	chr4:151261000-151270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:151262400-151268000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:151262400-151269000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:151262400-151271200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
37	chr4:151263600-151264800	Enhancers	Fetal Heart	heart
38	chr4:151263800-151264400	Enhancers	Stomach Smooth Muscle	stomach
39	chr4:151263800-151264800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:151263800-151264800	Enhancers	Liver	Liver
41	chr4:151263800-151265000	Enhancers	Colon Smooth Muscle	Colon
42	chr4:151264000-151264400	Enhancers	Fetal Lung	lung
43	chr4:151264000-151264600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:151264000-151265000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr4:151264000-151265000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr4:151264000-151265000	Enhancers	NHEK	skin
47	chr4:151264000-151265200	Enhancers	Rectal Smooth Muscle	rectum
48	chr4:151264200-151264400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:151264200-151264400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:151264200-151264400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links