Variant report

Variant	rs6535766
Chromosome Location	chr4:152074822-152074823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10000557	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10001039	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10005907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10011421	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10016998	0.85[ASN][1000 genomes]
rs10021054	0.88[EUR][1000 genomes]
rs10030785	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10032477	0.95[ASN][1000 genomes]
rs10213332	0.85[ASN][1000 genomes]
rs10222881	1.00[JPT][hapmap]
rs1046168	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10776521	0.93[ASN][1000 genomes]
rs10776523	0.93[ASN][1000 genomes]
rs10857254	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10857255	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10857256	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10964	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11099782	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11099783	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11099787	0.97[ASN][1000 genomes]
rs11099788	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11099790	0.80[ASN][1000 genomes]
rs11099791	0.93[ASN][1000 genomes]
rs11099794	0.85[ASN][1000 genomes]
rs11099795	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11723219	0.95[ASN][1000 genomes]
rs11726180	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11729981	0.85[ASN][1000 genomes]
rs11730087	0.85[ASN][1000 genomes]
rs11734586	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11938266	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11943477	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12500168	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12500223	0.85[ASN][1000 genomes]
rs12507657	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13123932	1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13125574	1.00[JPT][hapmap]
rs13146584	1.00[JPT][hapmap]
rs13149045	0.85[ASN][1000 genomes]
rs1316364	0.85[ASN][1000 genomes]
rs1320006	0.85[ASN][1000 genomes]
rs1320007	0.85[ASN][1000 genomes]
rs1320192	0.85[ASN][1000 genomes]
rs1878796	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2407406	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2407411	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2407414	0.85[ASN][1000 genomes]
rs2407415	0.85[ASN][1000 genomes]
rs2407424	0.93[ASN][1000 genomes]
rs2407425	0.93[ASN][1000 genomes]
rs2407426	0.93[ASN][1000 genomes]
rs2407427	0.88[ASN][1000 genomes]
rs2407428	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2407429	0.93[ASN][1000 genomes]
rs2407430	0.88[ASN][1000 genomes]
rs2407439	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2407440	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2407441	0.90[ASN][1000 genomes]
rs2897657	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2897660	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4434229	0.93[ASN][1000 genomes]
rs4616734	0.85[ASN][1000 genomes]
rs4640649	0.93[ASN][1000 genomes]
rs4696226	1.00[JPT][hapmap]
rs4696229	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4696235	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4696237	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4696648	1.00[JPT][hapmap]
rs6535763	1.00[JPT][hapmap]
rs6535765	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6535767	0.88[ASN][1000 genomes]
rs6535775	0.81[ASN][1000 genomes]
rs6535776	0.85[ASN][1000 genomes]
rs6812695	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6819599	1.00[JPT][hapmap]
rs6823953	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6825613	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6825952	0.97[ASN][1000 genomes]
rs6826863	1.00[JPT][hapmap]
rs6828937	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6829963	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6833956	1.00[JPT][hapmap]
rs6837905	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6838301	0.85[ASN][1000 genomes]
rs6838845	0.85[ASN][1000 genomes]
rs6847669	0.85[ASN][1000 genomes]
rs6853215	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6858377	0.80[ASN][1000 genomes]
rs7659146	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7666751	0.85[ASN][1000 genomes]
rs7668154	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7677374	1.00[JPT][hapmap]
rs7678748	1.00[JPT][hapmap]
rs7681030	0.85[ASN][1000 genomes]
rs7683092	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7687117	0.85[ASN][1000 genomes]
rs7689095	0.95[ASN][1000 genomes]
rs7690329	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7695005	0.85[ASN][1000 genomes]
rs7696634	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs891689	1.00[JPT][hapmap]
rs938990	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv949002	chr4:151693149-152095109	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1026416	chr4:151847403-152105879	Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv1016220	chr4:151997139-152164126	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv537306	chr4:151997139-152164126	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152025200-152085400	Weak transcription	Hela-S3	cervix
2	chr4:152027000-152086600	Weak transcription	Fetal Kidney	kidney
3	chr4:152027200-152095600	Weak transcription	Pancreas	Pancrea
4	chr4:152043400-152095800	Weak transcription	Placenta	Placenta
5	chr4:152047400-152087800	Weak transcription	Psoas Muscle	Psoas
6	chr4:152050600-152087000	Weak transcription	HSMMtube	muscle
7	chr4:152051600-152087200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:152055000-152105800	Weak transcription	Small Intestine	intestine
9	chr4:152059200-152087000	Weak transcription	Fetal Heart	heart
10	chr4:152062200-152083800	Weak transcription	Brain Substantia Nigra	brain
11	chr4:152062200-152090000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:152064200-152087400	Weak transcription	A549	lung
13	chr4:152065000-152091800	Weak transcription	HMEC	breast
14	chr4:152065400-152087800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:152065600-152089200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:152065800-152086600	Weak transcription	NHLF	lung
17	chr4:152065800-152086800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:152066000-152087000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:152066000-152095200	Weak transcription	Esophagus	oesophagus
20	chr4:152066200-152092600	Weak transcription	Colonic Mucosa	Colon
21	chr4:152066200-152095800	Weak transcription	Gastric	stomach
22	chr4:152066400-152095800	Weak transcription	Aorta	Aorta
23	chr4:152066600-152083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:152066600-152083800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:152067000-152083600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:152067000-152083800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:152067000-152090000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:152068600-152083800	Weak transcription	NHEK	skin
29	chr4:152069200-152090000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:152069400-152090000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:152069600-152078000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:152069600-152083800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:152069600-152083800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:152069600-152086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:152069600-152087800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:152069600-152087800	Weak transcription	Right Ventricle	heart
37	chr4:152069600-152087800	Weak transcription	HSMM	muscle
38	chr4:152069600-152089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:152069800-152077800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:152069800-152078600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr4:152069800-152083400	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:152069800-152085200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:152069800-152087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:152070400-152079200	Weak transcription	NHDF-Ad	bronchial
45	chr4:152070600-152076000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr4:152070600-152083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:152070800-152076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:152070800-152076000	Weak transcription	Liver	Liver
49	chr4:152070800-152076000	Weak transcription	HUVEC	blood vessel
50	chr4:152070800-152078400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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