Variant report

Variant	rs6537414
Chromosome Location	chr4:147219302-147219303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10022940	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10050271	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10212747	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10519783	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11100922	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12374207	0.83[EUR][1000 genomes]
rs12645587	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12711434	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13109522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13116650	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13117626	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13140054	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13143634	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1385847	0.83[EUR][1000 genomes]
rs1485953	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17828118	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1960018	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1991978	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2062436	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2062437	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2062438	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2163170	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2357078	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3849033	0.83[EUR][1000 genomes]
rs3899576	0.83[EUR][1000 genomes]
rs4103543	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4835291	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6537411	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537417	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6813017	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6844812	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6849067	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7661938	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7689364	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7693289	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs923166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962628	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9991483	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147174400-147231200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:147175400-147225400	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:147180400-147233200	Weak transcription	Liver	Liver
4	chr4:147198000-147224000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:147201000-147224800	Weak transcription	HMEC	breast
6	chr4:147201000-147225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:147201000-147249600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:147204000-147220800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:147206200-147225400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:147207600-147226600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:147208200-147220600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:147208200-147232800	Weak transcription	Aorta	Aorta
13	chr4:147208200-147234200	Weak transcription	Lung	lung
14	chr4:147208200-147247000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:147208400-147221600	Weak transcription	Pancreas	Pancrea
16	chr4:147208400-147222400	Weak transcription	Esophagus	oesophagus
17	chr4:147208400-147224000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:147208400-147228400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:147208400-147249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:147208400-147254600	Weak transcription	Gastric	stomach
21	chr4:147208600-147254800	Weak transcription	Adipose Nuclei	Adipose
22	chr4:147209200-147249000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:147209400-147225800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:147209400-147227800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr4:147209400-147245600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:147209600-147222000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:147209600-147225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:147209600-147229200	Weak transcription	Ovary	ovary
29	chr4:147209800-147222600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr4:147210400-147227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:147212000-147220600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:147212800-147229400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:147212800-147264200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:147213400-147223600	Weak transcription	GM12878-XiMat	blood
35	chr4:147213600-147225400	Weak transcription	Primary B cells from cord blood	blood
36	chr4:147215600-147254800	Weak transcription	Primary T cells from cord blood	blood

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