Variant report

Variant	rs6537567
Chromosome Location	chr10:49749918-49749919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49730645..49732196-chr10:49747881..49750168,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857595	0.86[ASN][1000 genomes]
rs1445151	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838572	0.85[CEU][hapmap]
rs2004665	0.81[GIH][hapmap]
rs4838419	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap]
rs4838618	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4838619	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4838620	0.81[CEU][hapmap];0.84[GIH][hapmap];0.85[TSI][hapmap]
rs7077561	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7092639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747532	0.85[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[LWK][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7911418	0.89[CEU][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs935265	0.85[CEU][hapmap]
rs935266	0.85[CEU][hapmap]
rs935267	0.85[CEU][hapmap]
rs935269	0.85[CEU][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6537567	SYT15	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49732200-49750800	Weak transcription	Gastric	stomach
2	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49735400-49756800	Weak transcription	HSMMtube	muscle
4	chr10:49735600-49755600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:49739400-49762400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
7	chr10:49742800-49755200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:49742800-49755200	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:49742800-49755600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:49743800-49757800	Weak transcription	HMEC	breast
11	chr10:49746000-49753600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:49746400-49750200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:49746400-49750400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:49746400-49753800	Weak transcription	Brain Substantia Nigra	brain
15	chr10:49746400-49754600	Weak transcription	NHDF-Ad	bronchial
16	chr10:49746600-49750200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:49747000-49751000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:49748600-49750200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:49748600-49750600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:49748800-49750000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:49748800-49750200	Genic enhancers	Muscle Satellite Cultured Cells	--
22	chr10:49748800-49752400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:49749000-49750000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:49749000-49751600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:49749400-49750200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:49749400-49750400	Enhancers	HUVEC	blood vessel
27	chr10:49749400-49751000	Strong transcription	NHLF	lung
28	chr10:49749400-49751800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:49749600-49751400	Genic enhancers	HSMM	muscle
30	chr10:49749600-49753800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:49749600-49758800	Weak transcription	NH-A	brain
32	chr10:49749800-49751400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr10:49749800-49751400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:49749800-49752600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:49749800-49753200	Weak transcription	Osteobl	bone

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