Variant report

Variant	rs6538084
Chromosome Location	chr12:87757684-87757685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10735256	0.86[EUR][1000 genomes]
rs10735257	0.89[AFR][1000 genomes]
rs10735258	0.86[EUR][1000 genomes]
rs10745442	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10777032	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10777034	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10777042	0.86[EUR][1000 genomes]
rs10858584	0.88[AFR][1000 genomes]
rs10858592	0.86[EUR][1000 genomes]
rs11104443	0.86[EUR][1000 genomes]
rs2406753	0.86[EUR][1000 genomes]
rs2406754	0.92[AFR][1000 genomes]
rs2897518	0.86[EUR][1000 genomes]
rs4147490	0.86[EUR][1000 genomes]
rs4254148	0.86[EUR][1000 genomes]
rs4269999	0.86[EUR][1000 genomes]
rs4300469	0.86[EUR][1000 genomes]
rs4326883	0.86[EUR][1000 genomes]
rs4338623	0.86[EUR][1000 genomes]
rs4402386	0.86[EUR][1000 genomes]
rs4466916	0.83[EUR][1000 genomes]
rs4502057	0.87[AFR][1000 genomes]
rs4561282	0.86[EUR][1000 genomes]
rs4564410	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4597138	0.86[EUR][1000 genomes]
rs4842455	0.86[AFR][1000 genomes]
rs4842556	0.85[AFR][1000 genomes]
rs4842559	0.85[AFR][1000 genomes]
rs4842570	0.86[EUR][1000 genomes]
rs5005936	0.86[EUR][1000 genomes]
rs6538078	0.86[EUR][1000 genomes]
rs6538079	0.86[EUR][1000 genomes]
rs6538082	0.86[EUR][1000 genomes]
rs6538083	0.86[EUR][1000 genomes]
rs6538087	0.86[EUR][1000 genomes]
rs6538088	0.86[EUR][1000 genomes]
rs7305305	0.86[EUR][1000 genomes]
rs7310810	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7962840	0.86[EUR][1000 genomes]
rs7970683	0.89[AFR][1000 genomes]
rs7970729	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7970832	0.86[EUR][1000 genomes]
rs7970866	0.89[AFR][1000 genomes]
rs7971055	0.89[AFR][1000 genomes]
rs7971424	0.89[AFR][1000 genomes]
rs7974679	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87752400-87772200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links