Variant report

Variant	rs6539149
Chromosome Location	chr12:104788505-104788506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10746000	0.94[ASN][1000 genomes]
rs11112036	0.94[ASN][1000 genomes]
rs12368816	0.81[ASN][1000 genomes]
rs12368824	0.85[ASN][1000 genomes]
rs17035534	0.85[ASN][1000 genomes]
rs2222877	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2243642	0.89[ASN][1000 genomes]
rs6539146	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7313450	0.83[ASN][1000 genomes]
rs7956065	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7957557	0.82[AFR][1000 genomes]
rs7958283	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7958404	0.94[ASN][1000 genomes]
rs7961423	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7962470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7976367	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104778200-104801400	Weak transcription	A549	lung
2	chr12:104787600-104788800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104788400-104788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:104788400-104790600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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