Variant report

Variant rs6539174
Chromosome Location chr12:105381745-105381746
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:105379600-105382000 Active TSS iPS-20b Cell Line embryonic stem cell
2 chr12:105379800-105381800 Active TSS iPS-15b Cell Line embryonic stem cell
3 chr12:105379800-105382200 Active TSS H9 Cell Line embryonic stem cell
4 chr12:105380600-105381800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr12:105380600-105381800 Flanking Active TSS Brain Hippocampus Middle brain
6 chr12:105380600-105381800 Flanking Active TSS Fetal Brain Female brain
7 chr12:105380600-105381800 Flanking Active TSS HMEC breast
8 chr12:105380600-105382000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
9 chr12:105380600-105382000 Enhancers Small Intestine intestine
10 chr12:105380600-105382200 Flanking Active TSS Dnd41 blood
11 chr12:105380800-105381800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
12 chr12:105380800-105381800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr12:105380800-105381800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
14 chr12:105380800-105381800 Flanking Active TSS Cortex derived primary cultured neurospheres brain
15 chr12:105380800-105381800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr12:105380800-105381800 Enhancers Primary mononuclear cells fromperipheralblood Blood
17 chr12:105380800-105381800 Enhancers Pancreas Pancrea
18 chr12:105380800-105381800 Flanking Active TSS NHEK skin
19 chr12:105380800-105382000 Enhancers Primary monocytes fromperipheralblood blood
20 chr12:105380800-105382200 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
21 chr12:105380800-105383200 Weak transcription Left Ventricle heart
22 chr12:105380800-105383800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr12:105380800-105386000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr12:105380800-105386200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr12:105380800-105386200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr12:105380800-105386400 Weak transcription Esophagus oesophagus
27 chr12:105381000-105381800 Enhancers Primary T cells fromperipheralblood blood
28 chr12:105381000-105381800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr12:105381000-105381800 Enhancers Brain Germinal Matrix brain
30 chr12:105381000-105381800 Enhancers Fetal Intestine Small intestine
31 chr12:105381000-105381800 Flanking Active TSS K562 blood
32 chr12:105381000-105382200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr12:105381000-105382200 Enhancers Ovary ovary
34 chr12:105381000-105384000 Weak transcription Fetal Muscle Trunk muscle
35 chr12:105381000-105386000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr12:105381000-105386800 Weak transcription Psoas Muscle Psoas
37 chr12:105381000-105388600 Weak transcription Right Ventricle heart
38 chr12:105381200-105381800 Flanking Active TSS H1 Cell Line embryonic stem cell
39 chr12:105381200-105381800 Enhancers Primary B cells from cord blood blood
40 chr12:105381200-105381800 Enhancers Primary T cells from cord blood blood
41 chr12:105381200-105381800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr12:105381200-105381800 Enhancers Fetal Lung lung
43 chr12:105381200-105381800 Enhancers HSMMtube muscle
44 chr12:105381200-105382000 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr12:105381200-105382000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
46 chr12:105381200-105382000 Enhancers Monocytes-CD14+_RO01746 blood
47 chr12:105381200-105382200 Enhancers Brain Angular Gyrus brain
48 chr12:105381200-105382200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
49 chr12:105381200-105382200 Enhancers HUVEC blood vessel
50 chr12:105381200-105383200 Weak transcription Fetal Intestine Large intestine

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