Variant report

Variant	rs6539218
Chromosome Location	chr12:105934875-105934876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105929404..105931315-chr12:105934200..105936102,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10507192	0.88[ASN][1000 genomes]
rs10507194	0.85[ASN][1000 genomes]
rs10778413	0.85[ASN][1000 genomes]
rs10778414	0.85[ASN][1000 genomes]
rs11112585	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112586	0.94[ASN][1000 genomes]
rs11112587	0.93[ASN][1000 genomes]
rs11112588	0.93[ASN][1000 genomes]
rs11112589	0.89[ASN][1000 genomes]
rs11112590	0.89[ASN][1000 genomes]
rs11112591	0.89[ASN][1000 genomes]
rs11112592	0.89[ASN][1000 genomes]
rs12296355	0.89[ASN][1000 genomes]
rs12305225	0.85[ASN][1000 genomes]
rs12307351	0.88[ASN][1000 genomes]
rs12316204	0.93[ASN][1000 genomes]
rs12321309	0.90[ASN][1000 genomes]
rs12371537	0.85[ASN][1000 genomes]
rs12580741	0.92[ASN][1000 genomes]
rs17037308	0.90[ASN][1000 genomes]
rs17037312	0.90[ASN][1000 genomes]
rs17037317	0.89[ASN][1000 genomes]
rs17041546	0.90[ASN][1000 genomes]
rs2374502	0.96[ASN][1000 genomes]
rs4015312	0.91[ASN][1000 genomes]
rs55646142	0.90[ASN][1000 genomes]
rs58066965	0.89[ASN][1000 genomes]
rs59504344	0.90[ASN][1000 genomes]
rs60865625	0.91[ASN][1000 genomes]
rs61200462	0.85[ASN][1000 genomes]
rs61645733	0.95[ASN][1000 genomes]
rs66754070	0.85[ASN][1000 genomes]
rs68053161	0.90[ASN][1000 genomes]
rs7299470	0.85[ASN][1000 genomes]
rs73184077	0.90[ASN][1000 genomes]
rs73184078	0.90[ASN][1000 genomes]
rs73184081	0.86[ASN][1000 genomes]
rs73184083	0.89[ASN][1000 genomes]
rs73184084	0.89[ASN][1000 genomes]
rs7956435	0.85[ASN][1000 genomes]
rs7959699	0.85[ASN][1000 genomes]
rs7969390	0.84[ASN][1000 genomes]
rs7969416	0.84[ASN][1000 genomes]
rs7969421	0.82[ASN][1000 genomes]
rs7969556	0.85[ASN][1000 genomes]
rs871219	0.94[ASN][1000 genomes]
rs871220	0.96[ASN][1000 genomes]
rs941101	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105932800-105935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105932800-105937000	Strong transcription	HUVEC	blood vessel
3	chr12:105934000-105940000	Weak transcription	Psoas Muscle	Psoas
4	chr12:105934200-105935000	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links