Variant report
| Variant | rs6540921 |
|---|---|
| Chromosome Location | chr1:216130448-216130449 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11579696 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11589059 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11589248 | 0.82[AMR][1000 genomes] |
| rs11589643 | 0.80[AMR][1000 genomes] |
| rs12408791 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12410350 | 0.84[AMR][1000 genomes] |
| rs1325520 | 0.97[ASN][1000 genomes] |
| rs1325521 | 0.97[ASN][1000 genomes] |
| rs17025681 | 1.00[ASN][1000 genomes] |
| rs17025683 | 1.00[ASN][1000 genomes] |
| rs17025684 | 1.00[ASN][1000 genomes] |
| rs17025685 | 1.00[ASN][1000 genomes] |
| rs17025758 | 1.00[ASN][1000 genomes] |
| rs17025764 | 1.00[ASN][1000 genomes] |
| rs17025797 | 1.00[ASN][1000 genomes] |
| rs17025799 | 1.00[ASN][1000 genomes] |
| rs17025802 | 1.00[ASN][1000 genomes] |
| rs57547189 | 1.00[ASN][1000 genomes] |
| rs6540922 | 1.00[ASN][1000 genomes] |
| rs6540923 | 0.80[AMR][1000 genomes] |
| rs6670538 | 0.80[AMR][1000 genomes] |
| rs6680930 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6686550 | 0.80[AMR][1000 genomes] |
| rs6690420 | 0.82[AMR][1000 genomes] |
| rs6690523 | 0.82[AMR][1000 genomes] |
| rs73092442 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73092444 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7529488 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv832548 | chr1:215987089-216175724 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428599 | chr1:216086224-216267211 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:216129600-216131000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr1:216129800-216132200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
