Variant report

Variant	rs6541179
Chromosome Location	chr1:221332613-221332614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10218738	0.84[EUR][1000 genomes]
rs10218739	0.84[EUR][1000 genomes]
rs1073166	0.86[EUR][1000 genomes]
rs10746408	0.86[EUR][1000 genomes]
rs10779421	0.84[EUR][1000 genomes]
rs10863580	0.83[EUR][1000 genomes]
rs10863584	0.83[EUR][1000 genomes]
rs10863585	0.86[EUR][1000 genomes]
rs10863589	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118645	0.81[EUR][1000 genomes]
rs11118650	0.84[EUR][1000 genomes]
rs11118657	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12139572	0.81[EUR][1000 genomes]
rs1372665	0.86[EUR][1000 genomes]
rs1417921	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1442465	0.84[EUR][1000 genomes]
rs1539139	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867071	0.84[EUR][1000 genomes]
rs1965817	0.86[EUR][1000 genomes]
rs1992480	0.84[EUR][1000 genomes]
rs2378435	0.84[EUR][1000 genomes]
rs4359036	0.81[EUR][1000 genomes]
rs4518910	0.84[EUR][1000 genomes]
rs4532839	0.86[EUR][1000 genomes]
rs6541171	0.84[EUR][1000 genomes]
rs6541172	0.84[EUR][1000 genomes]
rs6541180	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6656408	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6656596	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6657690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6664595	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6669742	0.84[EUR][1000 genomes]
rs6677416	0.84[EUR][1000 genomes]
rs6678719	0.85[AMR][1000 genomes]
rs6694121	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs6696268	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7513152	0.84[EUR][1000 genomes]
rs7527151	0.84[EUR][1000 genomes]
rs7527891	0.84[EUR][1000 genomes]
rs7545437	0.84[EUR][1000 genomes]
rs894361	0.84[EUR][1000 genomes]
rs9431421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9431432	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9431436	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs989463	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221329400-221333000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:221329400-221342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:221330200-221333400	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:221331200-221334800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:221331600-221335000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:221332000-221334600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:221332000-221334800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:221332400-221334400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:221332600-221334400	Weak transcription	Primary monocytes fromperipheralblood	blood

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