The 2.0 version of rSNPBase

Variant report

Variant rs6541375
Chromosome Location chr1:95429026-95429027
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95421600-95429200 Weak transcription Fetal Muscle Trunk muscle
2 chr1:95421600-95429600 Weak transcription Spleen Spleen
3 chr1:95422000-95450800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr1:95427000-95429200 Enhancers Fetal Intestine Small intestine
5 chr1:95427600-95429200 Enhancers Fetal Intestine Large intestine
6 chr1:95428000-95429200 Flanking Active TSS Primary T cells from cord blood blood
7 chr1:95428000-95429200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:95428000-95429200 Active TSS Right Atrium heart
9 chr1:95428200-95429200 Active TSS Ovary ovary
10 chr1:95428200-95429200 Flanking Active TSS Dnd41 blood
11 chr1:95428400-95429200 Active TSS Primary T helper naive cells fromperipheralblood blood
12 chr1:95428400-95429200 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:95428600-95429200 Flanking Active TSS Liver Liver
14 chr1:95428600-95429800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:95428800-95429200 Weak transcription Small Intestine intestine
16 chr1:95428800-95431400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:95428800-95432200 Weak transcription Pancreas Pancrea
18 chr1:95428800-95432600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:95428800-95436400 Weak transcription Lung lung
20 chr1:95428800-95439200 Weak transcription Aorta Aorta
21 chr1:95429000-95429200 Enhancers Primary monocytes fromperipheralblood blood
22 chr1:95429000-95429200 Active TSS Primary hematopoietic stem cells blood
23 chr1:95429000-95429200 Enhancers Primary T helper cells fromperipheralblood blood
24 chr1:95429000-95429200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
25 chr1:95429000-95429200 Enhancers Muscle Satellite Cultured Cells --
26 chr1:95429000-95429200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:95429000-95429200 Enhancers Fetal Muscle Leg muscle
28 chr1:95429000-95429200 Enhancers Fetal Thymus thymus
29 chr1:95429000-95429200 Enhancers Rectal Mucosa Donor 31 rectum
30 chr1:95429000-95429200 Enhancers GM12878-XiMat blood
31 chr1:95429000-95429200 Enhancers HUVEC blood vessel
32 chr1:95429000-95429200 Enhancers Monocytes-CD14+_RO01746 blood
33 chr1:95429000-95429600 Enhancers Primary T cells fromperipheralblood blood
34 chr1:95429000-95429600 Enhancers Primary Natural Killer cells fromperipheralblood blood
35 chr1:95429000-95429600 Enhancers Primary T killer memory cells from peripheral blood blood
36 chr1:95429000-95429800 Enhancers Primary B cells from cord blood blood
37 chr1:95429000-95429800 Enhancers Primary B cells from peripheral blood blood
38 chr1:95429000-95429800 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr1:95429000-95429800 Enhancers Fetal Adrenal Gland Adrenal Gland
40 chr1:95429000-95429800 Enhancers HepG2 liver
41 chr1:95429000-95430000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
42 chr1:95429000-95436200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:95429000-95436200 Weak transcription HSMM muscle
44 chr1:95429000-95436400 Weak transcription Fetal Kidney kidney
45 chr1:95429000-95436400 Weak transcription HSMMtube muscle
46 chr1:95429000-95437600 Weak transcription Right Ventricle heart
47 chr1:95429000-95439800 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:95429000-95467600 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015