Variant report

Variant	rs6542353
Chromosome Location	chr2:111955144-111955145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11123406	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11123410	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4849463	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60665449	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6738028	0.82[ASN][1000 genomes]
rs6749625	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs744531	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs880892	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs938100	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv834331	chr2:111812139-112004678	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1803356	chr2:111899783-112662597	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv428402	chr2:111899783-112662597	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1801950	chr2:111899783-112746937	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv2757825	chr2:111899783-112746937	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	esv2759083	chr2:111899783-112746937	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111944400-111957400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:111950200-111969600	Weak transcription	Dnd41	blood
3	chr2:111951800-111956600	Enhancers	GM12878-XiMat	blood
4	chr2:111952000-111955400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:111952200-111974800	Weak transcription	Aorta	Aorta
6	chr2:111952600-111963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:111952600-111965200	Weak transcription	Fetal Intestine Small	intestine
8	chr2:111953000-111955200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr2:111953000-111957800	Weak transcription	HepG2	liver
10	chr2:111953000-111968000	Weak transcription	K562	blood
11	chr2:111953200-111955200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:111953200-111957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:111954400-111956200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:111954600-111960000	Weak transcription	HSMMtube	muscle
15	chr2:111954800-112006800	Weak transcription	HUVEC	blood vessel
16	chr2:111955000-111960200	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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