The 2.0 version of rSNPBase

Variant report

Variant rs6544229
Chromosome Location chr2:39677456-39677457
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39665200-39696000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:39665600-39681600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr2:39665600-39684200 Weak transcription Lung lung
4 chr2:39665600-39685600 Weak transcription Left Ventricle heart
5 chr2:39665600-39694600 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr2:39665600-39694800 Weak transcription Pancreas Pancrea
7 chr2:39666000-39681200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr2:39666200-39681400 Weak transcription Fetal Intestine Large intestine
9 chr2:39666200-39696600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr2:39666600-39682200 Weak transcription Fetal Muscle Leg muscle
11 chr2:39666800-39677800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr2:39666800-39681000 Weak transcription Brain Substantia Nigra brain
13 chr2:39666800-39681600 Weak transcription Ovary ovary
14 chr2:39667000-39681400 Weak transcription Duodenum Mucosa Duodenum
15 chr2:39667000-39681600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr2:39667000-39694600 Weak transcription HSMMtube muscle
17 chr2:39667200-39685200 Weak transcription NHEK skin
18 chr2:39667200-39694600 Weak transcription NHLF lung
19 chr2:39667200-39694800 Weak transcription Brain Angular Gyrus brain
20 chr2:39667200-39696400 Weak transcription Fetal Heart heart
21 chr2:39667400-39682000 Weak transcription HSMM muscle
22 chr2:39667400-39694600 Weak transcription Rectal Smooth Muscle rectum
23 chr2:39667400-39694600 Weak transcription Stomach Smooth Muscle stomach
24 chr2:39668200-39681400 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr2:39668200-39684800 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr2:39668200-39685000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr2:39668200-39694800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr2:39668200-39696800 Weak transcription Right Ventricle heart
29 chr2:39670400-39682800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr2:39670400-39685000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr2:39670800-39684800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr2:39671000-39682200 Weak transcription Primary hematopoietic stem cells blood
33 chr2:39671200-39681200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr2:39671200-39685000 Weak transcription Aorta Aorta
35 chr2:39671600-39682600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr2:39671800-39682000 Weak transcription Brain Cingulate Gyrus brain
37 chr2:39672000-39681400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr2:39672200-39681400 Weak transcription Adipose Nuclei Adipose
39 chr2:39672200-39684600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr2:39672600-39681400 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr2:39673400-39681000 Weak transcription Liver Liver
42 chr2:39673600-39681000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr2:39674800-39678800 Enhancers HepG2 liver
44 chr2:39675000-39696400 Weak transcription Fetal Kidney kidney
45 chr2:39675200-39677800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr2:39675200-39680800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr2:39675200-39682600 Weak transcription Osteobl bone
48 chr2:39675200-39682800 Weak transcription HMEC breast
49 chr2:39675200-39686000 Weak transcription NHDF-Ad bronchial
50 chr2:39675400-39682200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015