Variant report

Variant	rs6544320
Chromosome Location	chr2:40533657-40533658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4140917	1.00[MEX][hapmap]
rs673689	1.00[MEX][hapmap]
rs72943129	1.00[AMR][1000 genomes]
rs7598447	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010508	chr2:40526981-40590777	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv535655	chr2:40526981-40590777	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40518200-40540600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:40528800-40541400	Weak transcription	Dnd41	blood
3	chr2:40530200-40536200	Enhancers	Fetal Heart	heart
4	chr2:40530400-40534000	Enhancers	Right Ventricle	heart
5	chr2:40531400-40534400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:40531800-40542600	Weak transcription	Osteobl	bone
7	chr2:40532000-40544800	Weak transcription	HSMM	muscle
8	chr2:40532000-40551800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:40532200-40542400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:40532400-40534800	Weak transcription	Right Atrium	heart
11	chr2:40532800-40533800	Enhancers	Stomach Smooth Muscle	stomach
12	chr2:40533000-40533800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr2:40533200-40533800	Enhancers	Fetal Lung	lung
14	chr2:40533200-40534000	Enhancers	Colon Smooth Muscle	Colon
15	chr2:40533200-40537400	Weak transcription	Left Ventricle	heart
16	chr2:40533400-40534000	Enhancers	Fetal Brain Female	brain
17	chr2:40533600-40533800	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:40533600-40534000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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