Variant report

Variant	rs6545026
Chromosome Location	chr2:48520539-48520540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10186237	0.92[YRI][hapmap]
rs10199431	0.92[YRI][hapmap]
rs11682044	0.92[YRI][hapmap]
rs11685861	0.92[YRI][hapmap]
rs11690690	0.92[YRI][hapmap]
rs1509562	0.97[ASN][1000 genomes]
rs17037255	1.00[ASN][1000 genomes]
rs17397205	0.97[ASN][1000 genomes]
rs4547573	0.88[YRI][hapmap]
rs57729372	0.84[ASN][1000 genomes]
rs62137000	0.84[ASN][1000 genomes]
rs62138796	1.00[ASN][1000 genomes]
rs62138798	1.00[ASN][1000 genomes]
rs62138804	0.90[ASN][1000 genomes]
rs62138805	0.90[ASN][1000 genomes]
rs62138815	0.87[ASN][1000 genomes]
rs62138816	0.87[ASN][1000 genomes]
rs62138817	0.84[ASN][1000 genomes]
rs6545025	0.97[ASN][1000 genomes]
rs6545027	0.92[YRI][hapmap]
rs6545030	0.92[YRI][hapmap]
rs6545036	0.82[ASW][hapmap];0.96[YRI][hapmap]
rs6705802	0.92[YRI][hapmap]
rs6712029	0.92[YRI][hapmap]
rs6738828	0.87[ASN][1000 genomes]
rs72820413	0.84[ASN][1000 genomes]
rs72820414	0.84[ASN][1000 genomes]
rs7566239	0.96[YRI][hapmap]
rs7576964	0.92[YRI][hapmap]
rs7577237	0.96[YRI][hapmap]
rs7579932	0.96[YRI][hapmap]
rs7583112	1.00[ASN][1000 genomes]
rs7600794	0.92[YRI][hapmap]
rs7606104	0.92[YRI][hapmap]
rs959141	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv519831	chr2:48072855-48566031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1003766	chr2:48102244-48559654	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48506000-48539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:48516800-48522200	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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