Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10166179	1.00[EUR][1000 genomes]
rs10188600	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885098	1.00[EUR][1000 genomes]
rs11895933	1.00[EUR][1000 genomes]
rs13386997	1.00[EUR][1000 genomes]
rs13394958	1.00[EUR][1000 genomes]
rs13409783	1.00[EUR][1000 genomes]
rs13419870	1.00[EUR][1000 genomes]
rs171350	0.84[AFR][1000 genomes]
rs3936082	1.00[EUR][1000 genomes]
rs56726104	1.00[EUR][1000 genomes]
rs57621843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61332964	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61743072	1.00[EUR][1000 genomes]
rs6545436	1.00[EUR][1000 genomes]
rs6753590	1.00[EUR][1000 genomes]
rs6753689	1.00[EUR][1000 genomes]
rs6756814	1.00[EUR][1000 genomes]
rs6757017	1.00[EUR][1000 genomes]
rs72918768	1.00[EUR][1000 genomes]
rs73934323	1.00[EUR][1000 genomes]
rs7559157	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54908800-54921400	Weak transcription	Lung	lung
2	chr2:54919400-54922400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:54919400-54924800	Weak transcription	Fetal Intestine Small	intestine
4	chr2:54919600-54921400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:54919800-54922800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:54919800-54925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:54921200-54921600	Enhancers	Brain Hippocampus Middle	brain
8	chr2:54921200-54921800	Enhancers	HepG2	liver

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