Variant report

Variant	rs6545450
Chromosome Location	chr2:55091223-55091224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11680118	0.87[ASN][1000 genomes]
rs12991420	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12997215	0.93[ASN][1000 genomes]
rs13004573	0.96[ASN][1000 genomes]
rs13005511	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs13020090	0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs13033818	0.81[CHB][hapmap]
rs35579392	0.96[ASN][1000 genomes]
rs35619447	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35727501	0.93[ASN][1000 genomes]
rs56386746	0.88[ASN][1000 genomes]
rs71413277	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1796192	chr2:55081033-55110969	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6545450	ACYP2	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55068400-55096200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:55068400-55109000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:55068600-55122400	Weak transcription	Brain Anterior Caudate	brain
4	chr2:55072600-55091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:55073400-55093800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:55078800-55106800	Weak transcription	Brain Angular Gyrus	brain
7	chr2:55081400-55122400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:55087000-55098600	Weak transcription	HepG2	liver
9	chr2:55087800-55126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:55088000-55096000	Weak transcription	Psoas Muscle	Psoas
11	chr2:55088200-55098800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:55090400-55092000	Enhancers	Liver	Liver
13	chr2:55091000-55091800	Enhancers	NHEK	skin
14	chr2:55091200-55092400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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