Variant report

Variant	rs6545592
Chromosome Location	chr2:56916860-56916861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10174159	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10174228	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10177812	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10182642	0.83[ASN][1000 genomes]
rs10189352	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10200459	0.83[ASN][1000 genomes]
rs10201224	0.86[AMR][1000 genomes]
rs10201347	0.93[AMR][1000 genomes]
rs10208734	0.83[ASN][1000 genomes]
rs11125648	0.87[ASN][1000 genomes]
rs12105442	0.87[ASN][1000 genomes]
rs12465575	0.88[ASN][1000 genomes]
rs12472267	0.82[ASN][1000 genomes]
rs13392437	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13423875	0.83[ASN][1000 genomes]
rs2193819	0.90[AFR][1000 genomes]
rs2870074	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2870076	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34767926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671294	0.83[ASN][1000 genomes]
rs4672146	1.00[ASN][1000 genomes]
rs4672147	1.00[ASN][1000 genomes]
rs4672148	0.96[ASN][1000 genomes]
rs4672151	0.83[ASN][1000 genomes]
rs60798964	0.88[ASN][1000 genomes]
rs61553870	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6713552	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6713559	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6732353	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73940764	0.88[ASN][1000 genomes]
rs7574093	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7585003	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs977388	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9807930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9808085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808265	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9808321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808420	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56914600-56928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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