Variant report

Variant	rs6546260
Chromosome Location	chr2:66920774-66920775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:66905064..66907214-chr2:66920521..66923497,2	MCF-7	breast:
2	chr2:66919319..66922022-chr2:66923569..66925465,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MEIS1-3	chr2:66918804-66921094	XLOC_001508

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1861446	1.00[YRI][hapmap]
rs6711221	1.00[YRI][hapmap]
rs7605171	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012523	chr2:66919704-66961372	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66917000-66922600	Active TSS	Colon Smooth Muscle	Colon
2	chr2:66917400-66920800	Active TSS	Stomach Smooth Muscle	stomach
3	chr2:66917600-66921400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:66917600-66921600	Active TSS	Rectal Smooth Muscle	rectum
5	chr2:66917600-66922400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:66918000-66921200	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr2:66918200-66921000	Active TSS	Fetal Lung	lung
8	chr2:66918200-66921200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr2:66918200-66921400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:66918200-66921400	Active TSS	Fetal Stomach	stomach
11	chr2:66919000-66921000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:66919000-66921800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:66919000-66927000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:66919200-66921600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:66919200-66925200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:66919200-66927200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:66919200-66929000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:66920000-66920800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:66920200-66920800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:66920200-66920800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:66920200-66921600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr2:66920400-66925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:66920400-66927000	Weak transcription	Fetal Intestine Large	intestine
24	chr2:66920600-66921000	Bivalent/Poised TSS	Fetal Brain Male	brain
25	chr2:66920600-66921200	Flanking Active TSS	Fetal Kidney	kidney
26	chr2:66920600-66921800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr2:66920600-66922200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:66920600-66925000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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