Variant report

Variant	rs6546746
Chromosome Location	chr2:72380628-72380629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10166057	0.85[ASN][1000 genomes]
rs10202129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13407599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901091	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768638	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768639	0.85[ASN][1000 genomes]
rs3768641	1.00[JPT][hapmap]
rs62150093	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62150094	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546748	1.00[ASN][1000 genomes]
rs6710195	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710373	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738598	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738942	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557210	0.92[ASN][1000 genomes]
rs7596302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9309462	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582207	chr2:72329603-72389334	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72377600-72381400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:72378000-72382600	Weak transcription	Fetal Heart	heart
3	chr2:72380200-72381600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:72380600-72380800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:72380600-72380800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:72380600-72380800	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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