Variant report

Variant	rs6546762
Chromosome Location	chr2:72548442-72548443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10496183	0.81[AFR][1000 genomes]
rs11884869	0.96[AFR][1000 genomes]
rs11890482	0.98[AFR][1000 genomes]
rs11891573	0.90[AFR][1000 genomes]
rs11894521	0.90[AFR][1000 genomes]
rs11903912	0.85[AFR][1000 genomes]
rs1517179	0.84[AFR][1000 genomes]
rs17008057	0.82[AFR][1000 genomes]
rs55714718	0.99[AFR][1000 genomes]
rs55840408	0.81[AFR][1000 genomes]
rs6546761	0.93[AFR][1000 genomes]
rs6546763	0.88[AFR][1000 genomes]
rs66827358	0.84[AFR][1000 genomes]
rs66920016	0.95[AFR][1000 genomes]
rs6707920	0.91[AFR][1000 genomes]
rs67085067	0.84[AFR][1000 genomes]
rs6723380	0.88[AFR][1000 genomes]
rs6735400	0.95[AFR][1000 genomes]
rs6746583	0.95[AFR][1000 genomes]
rs6746586	0.95[AFR][1000 genomes]
rs7559116	0.94[AFR][1000 genomes]
rs7607353	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72524600-72552800	Weak transcription	Left Ventricle	heart
2	chr2:72531200-72594800	Weak transcription	Esophagus	oesophagus
3	chr2:72537200-72567800	Weak transcription	Ovary	ovary
4	chr2:72538600-72553400	Weak transcription	Aorta	Aorta
5	chr2:72538600-72567800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:72541600-72561400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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