Variant report

Variant	rs6549177
Chromosome Location	chr3:69086473-69086474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69086237..69089530-chr3:69090579..69093333,4	K562	blood:
2	chr3:69086355..69088541-chr3:69097767..69099637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265355	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6549179	0.96[ASN][1000 genomes]
rs6549180	0.96[ASN][1000 genomes]
rs6801855	0.81[ASN][1000 genomes]
rs7429868	0.85[ASN][1000 genomes]
rs9985501	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69063400-69100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:69064000-69098600	Weak transcription	Hela-S3	cervix
3	chr3:69066000-69095800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:69066000-69096400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:69066400-69096800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:69066600-69099000	Strong transcription	Placenta	Placenta
7	chr3:69067400-69098200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:69067600-69090800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:69069200-69099000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:69069400-69097800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:69070200-69096400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:69070400-69098000	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr3:69070400-69098400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:69070600-69089600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:69070600-69095800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:69070600-69097800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:69071000-69090200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:69071000-69098400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:69071000-69098600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr3:69071200-69098200	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:69072200-69090000	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:69072200-69096200	Strong transcription	Liver	Liver
23	chr3:69072200-69098200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:69072400-69090400	Strong transcription	Adipose Nuclei	Adipose
25	chr3:69072400-69096400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:69072400-69097200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:69072400-69098000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:69072600-69097400	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:69072600-69097800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:69072600-69098600	Strong transcription	Fetal Intestine Large	intestine
31	chr3:69072800-69097200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:69073400-69094200	Strong transcription	Primary hematopoietic stem cells	blood
33	chr3:69073600-69089800	Strong transcription	Fetal Thymus	thymus
34	chr3:69073600-69096400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr3:69073600-69099200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:69074000-69088600	Strong transcription	GM12878-XiMat	blood
37	chr3:69074000-69090400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr3:69074400-69097600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:69074600-69100200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:69075000-69096800	Weak transcription	Fetal Heart	heart
41	chr3:69075600-69095000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:69076200-69096400	Strong transcription	Dnd41	blood
43	chr3:69076400-69089800	Strong transcription	Primary T cells from cord blood	blood
44	chr3:69076600-69090600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:69076800-69090000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:69077400-69096400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr3:69078400-69090200	Strong transcription	Fetal Muscle Leg	muscle
48	chr3:69078600-69088200	Strong transcription	Brain Hippocampus Middle	brain
49	chr3:69078800-69089800	Strong transcription	Primary B cells from cord blood	blood
50	chr3:69079000-69098200	Strong transcription	NHDF-Ad	bronchial

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