Variant report

Variant	rs6550882
Chromosome Location	chr3:24683601-24683602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10433571	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10865797	0.87[ASN][1000 genomes]
rs11928551	0.82[YRI][hapmap]
rs13433753	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6550886	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6550889	0.82[CEU][hapmap]
rs66848684	0.80[ASN][1000 genomes]
rs7635988	0.96[ASN][1000 genomes]
rs9812637	0.86[YRI][hapmap]
rs9820166	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9843745	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24681000-24683800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:24681600-24683800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:24681800-24683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:24682800-24683800	Enhancers	HUVEC	blood vessel
5	chr3:24683000-24684000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:24683400-24684200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:24683400-24684200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:24683400-24684400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:24683600-24684200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:24683600-24694800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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