Variant report

Variant	rs6551303
Chromosome Location	chr3:88306231-88306232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10446360	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11128027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11128028	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11128030	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11128033	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13099502	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101083	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1463464	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1463465	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2061369	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2061372	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125221	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2125222	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2344555	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4859006	0.84[ASN][1000 genomes]
rs6419870	0.83[EUR][1000 genomes]
rs6419871	0.82[EUR][1000 genomes]
rs6551304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794782	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6807070	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7624964	0.83[EUR][1000 genomes]
rs7626918	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7636616	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7639732	0.82[EUR][1000 genomes]
rs7644536	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7647152	0.84[EUR][1000 genomes]
rs7650135	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9862883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874142	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1013031	chr3:88256289-88347505	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3366990	chr3:88293106-88346403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6551303	CGGBP1///LOC728397	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88305800-88308200	Enhancers	Fetal Heart	heart

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