Variant report

Variant	rs655175
Chromosome Location	chr11:100710202-100710203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs480244	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55753301	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635853	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs654257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs680419	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7932488	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100698800-100712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:100701600-100717000	Weak transcription	Fetal Kidney	kidney
4	chr11:100703000-100710800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:100703800-100712400	Weak transcription	Left Ventricle	heart
7	chr11:100704600-100719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:100704800-100710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:100705200-100711200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:100705200-100711800	Weak transcription	Stomach Mucosa	stomach
11	chr11:100705400-100711800	Weak transcription	A549	lung
12	chr11:100705400-100712000	Weak transcription	Liver	Liver
13	chr11:100705400-100712600	Weak transcription	HSMMtube	muscle
14	chr11:100709000-100715000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:100709200-100710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:100709200-100711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:100709600-100710400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:100710200-100710600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:100710200-100710600	ZNF genes & repeats	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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