Variant report

Variant	rs6552934
Chromosome Location	chr4:186807834-186807835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:186799508..186801311-chr4:186806279..186808668,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10031442	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1026361	0.86[ASN][1000 genomes]
rs1026362	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1031506	0.88[ASN][1000 genomes]
rs11132358	0.83[ASN][1000 genomes]
rs11722545	0.82[ASN][1000 genomes]
rs11723186	0.81[ASN][1000 genomes]
rs11726533	0.82[JPT][hapmap]
rs11727354	0.82[CHB][hapmap]
rs12502204	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs12503031	0.88[ASN][1000 genomes]
rs12504077	0.87[ASN][1000 genomes]
rs12640736	0.93[ASN][1000 genomes]
rs12643549	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs12643665	0.93[ASN][1000 genomes]
rs13110782	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs13114501	0.82[ASN][1000 genomes]
rs13120232	0.81[ASN][1000 genomes]
rs13132627	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs13138996	0.82[ASN][1000 genomes]
rs13139354	0.82[ASN][1000 genomes]
rs13144263	0.81[ASN][1000 genomes]
rs13144444	0.82[ASN][1000 genomes]
rs13150309	0.84[ASN][1000 genomes]
rs1947455	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2124092	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2168165	0.85[ASN][1000 genomes]
rs2310372	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs34122211	0.82[ASN][1000 genomes]
rs34457125	0.85[ASN][1000 genomes]
rs34458168	0.85[ASN][1000 genomes]
rs34520754	0.87[ASN][1000 genomes]
rs35173472	0.82[ASN][1000 genomes]
rs35318302	0.81[ASN][1000 genomes]
rs35578127	0.94[ASN][1000 genomes]
rs35820308	0.84[ASN][1000 genomes]
rs35834071	0.84[ASN][1000 genomes]
rs36076360	0.84[ASN][1000 genomes]
rs4861687	0.82[ASN][1000 genomes]
rs4861688	0.82[ASN][1000 genomes]
rs4862583	0.84[ASN][1000 genomes]
rs4862584	0.84[ASN][1000 genomes]
rs4862586	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4862588	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4862593	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs4862596	0.81[JPT][hapmap]
rs55737156	0.85[ASN][1000 genomes]
rs55926227	0.85[ASN][1000 genomes]
rs55982043	0.89[ASN][1000 genomes]
rs56122940	0.87[ASN][1000 genomes]
rs56130639	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56218413	0.85[ASN][1000 genomes]
rs6825889	0.91[ASN][1000 genomes]
rs6830105	0.82[ASN][1000 genomes]
rs6853037	0.82[ASN][1000 genomes]
rs72707664	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022661	chr4:186789827-187122464	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv537422	chr4:186789827-187122464	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186802200-186811600	Weak transcription	Pancreas	Pancrea
2	chr4:186804000-186818000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:186805000-186814400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:186806400-186815000	Weak transcription	Fetal Brain Female	brain
5	chr4:186807200-186809000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:186807800-186808000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr4:186807800-186808600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr4:186807800-186808600	Active TSS	Primary B cells from cord blood	blood

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