Variant report

Variant	rs6553820
Chromosome Location	chr4:175695740-175695741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11133054	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133055	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945237	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs13126499	0.84[EUR][1000 genomes]
rs1352055	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs1385832	0.86[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.80[TSI][hapmap]
rs1385838	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1485931	0.84[CEU][hapmap];0.90[YRI][hapmap]
rs1994701	1.00[CHD][hapmap]
rs36082225	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4513542	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap]
rs4596220	1.00[CHD][hapmap]
rs4695961	0.86[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4695962	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6553817	0.86[CEU][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6553818	0.95[CEU][hapmap]
rs6553819	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6553821	1.00[CEU][hapmap]
rs6553823	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553825	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553827	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825619	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826181	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830550	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs6832656	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6833303	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs6837602	0.82[YRI][hapmap]
rs6837642	0.93[CEU][hapmap]
rs6838010	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6839668	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6841074	0.91[CEU][hapmap]
rs6846497	0.84[CEU][hapmap];0.95[YRI][hapmap]
rs6847879	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap]
rs6853830	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6854762	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6855717	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs6858127	0.94[YRI][hapmap]
rs7687424	0.86[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7696263	0.86[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034301	chr4:175656538-176055348	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv537364	chr4:175656538-176055348	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1030235	chr4:175663839-175969742	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv537365	chr4:175663839-175969742	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1027622	chr4:175680329-175716070	Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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