Variant report

Variant	rs6554102
Chromosome Location	chr4:54273048-54273049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10012853	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10013573	0.83[ASN][1000 genomes]
rs10028214	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1014056	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10517296	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11133267	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11935822	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11942086	0.82[ASN][1000 genomes]
rs11946199	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12507723	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13120051	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13130836	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1351514	0.84[ASN][1000 genomes]
rs17082659	0.87[ASN][1000 genomes]
rs2128103	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271555	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34173240	0.90[ASN][1000 genomes]
rs34317954	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35033239	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35225781	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817270	0.85[ASN][1000 genomes]
rs3986364	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6420001	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6554095	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6554096	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554103	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846569	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6847289	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71597836	0.87[ASN][1000 genomes]
rs7678953	0.85[ASN][1000 genomes]
rs7679743	0.90[ASN][1000 genomes]
rs7684450	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7684894	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694840	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs980988	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs997832	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9992820	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9997358	0.85[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
4	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
6	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
7	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
8	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
9	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
11	chr4:54256600-54319200	Weak transcription	Gastric	stomach
12	chr4:54256800-54275400	Weak transcription	Lung	lung
13	chr4:54256800-54275600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:54256800-54279000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:54264000-54279600	Weak transcription	Fetal Heart	heart
18	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:54266400-54293600	Weak transcription	NHEK	skin
20	chr4:54266600-54279400	Weak transcription	Brain Angular Gyrus	brain
21	chr4:54266800-54275600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
23	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
24	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
25	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:54268200-54276200	Weak transcription	Fetal Kidney	kidney
28	chr4:54268200-54280800	Weak transcription	HUVEC	blood vessel
29	chr4:54268400-54280600	Weak transcription	HSMM	muscle
30	chr4:54268400-54319800	Weak transcription	A549	lung
31	chr4:54268600-54287400	Weak transcription	Brain Anterior Caudate	brain
32	chr4:54268800-54280800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:54268800-54292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:54269000-54276200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:54269200-54281400	Weak transcription	HepG2	liver
36	chr4:54269200-54293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:54269400-54279400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:54269600-54295000	Weak transcription	HMEC	breast
41	chr4:54270000-54275400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:54270000-54275600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:54270000-54275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:54270000-54276000	Weak transcription	Adipose Nuclei	Adipose
45	chr4:54270000-54276400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:54270000-54276400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:54270000-54279200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr4:54270000-54279400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:54270000-54280800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:54270000-54280800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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