Variant report

Variant	rs6554208
Chromosome Location	chr4:55746209-55746210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1021604	0.88[ASN][1000 genomes]
rs11727341	0.89[ASN][1000 genomes]
rs1391133	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1391134	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1391135	0.84[ASN][1000 genomes]
rs1497487	0.91[ASN][1000 genomes]
rs1497488	0.87[ASN][1000 genomes]
rs1497489	0.89[ASN][1000 genomes]
rs1497493	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1497496	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1497497	0.84[ASN][1000 genomes]
rs1497498	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1532460	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17084899	0.89[AMR][1000 genomes]
rs1874645	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1874646	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1874648	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1874652	0.85[AMR][1000 genomes]
rs1874653	0.84[AMR][1000 genomes]
rs2173231	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28402753	0.90[AMR][1000 genomes]
rs28435137	0.83[AMR][1000 genomes]
rs28720093	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3920049	0.81[AMR][1000 genomes]
rs4864932	0.88[AMR][1000 genomes]
rs4864935	0.89[ASN][1000 genomes]
rs55841826	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56095026	0.85[ASN][1000 genomes]
rs60418720	0.89[ASN][1000 genomes]
rs61708640	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6554207	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6825254	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6827165	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6830338	0.91[ASN][1000 genomes]
rs6847687	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7659889	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7690519	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs878120	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55745200-55746400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:55745200-55746400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:55745200-55746400	Enhancers	NHLF	lung
4	chr4:55745200-55746600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:55745200-55746800	Enhancers	NH-A	brain
6	chr4:55745400-55746400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:55745400-55746600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:55746000-55750200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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