Variant report

Variant	rs6554254
Chromosome Location	chr4:56118414-56118415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6830044	1.00[CHD][hapmap]
rs7696300	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56112000-56120000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:56115000-56121000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:56115600-56120000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:56117000-56119400	Enhancers	HUVEC	blood vessel
5	chr4:56117600-56119400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:56117800-56119800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:56117800-56120000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:56117800-56122800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:56118000-56119000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:56118000-56120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:56118000-56120000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:56118000-56122600	Weak transcription	Right Atrium	heart
13	chr4:56118200-56119600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:56118200-56119800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:56118400-56120200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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