Variant report

Variant	rs6556878
Chromosome Location	chr5:95078659-95078660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95076489..95078677-chr5:95078821..95081306,2	MCF-7	breast:
2	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:
3	chr5:95074195..95076206-chr5:95077935..95081038,4	MCF-7	breast:
4	chr5:95077185..95079182-chr5:95082308..95084310,2	MCF-7	breast:
5	chr5:94980512..95018354-chr5:95057997..95080764,228	K562	blood:

Variant related genes	Relation type
ENSG00000175449	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17085041	0.86[AFR][1000 genomes]
rs6876866	1.00[AMR][1000 genomes]
rs7706030	1.00[AMR][1000 genomes]
rs7714523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95068200-95095400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:95068400-95096200	Weak transcription	Aorta	Aorta
3	chr5:95071000-95082600	Weak transcription	Right Ventricle	heart
4	chr5:95071200-95084400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:95071200-95094400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:95071400-95082400	Weak transcription	Brain Angular Gyrus	brain
7	chr5:95071400-95082600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:95071400-95087400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:95071400-95094200	Weak transcription	A549	lung
10	chr5:95071600-95087600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:95071800-95079000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:95071800-95079000	Weak transcription	Lung	lung
13	chr5:95071800-95082600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:95071800-95085800	Weak transcription	Gastric	stomach
15	chr5:95071800-95096200	Weak transcription	Colonic Mucosa	Colon
16	chr5:95072200-95079800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:95072200-95086200	Weak transcription	HepG2	liver
18	chr5:95072200-95087800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:95072400-95080400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:95072400-95084600	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:95072800-95133400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:95073000-95083400	Strong transcription	Fetal Muscle Leg	muscle
23	chr5:95073200-95080000	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:95073400-95081600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:95073400-95082400	Weak transcription	Brain Anterior Caudate	brain
26	chr5:95074200-95082400	Strong transcription	Osteobl	bone
27	chr5:95074200-95082800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:95074400-95079000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:95074400-95082400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:95074400-95097200	Weak transcription	Spleen	Spleen
31	chr5:95074800-95079000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:95074800-95094800	Weak transcription	Small Intestine	intestine
33	chr5:95075000-95079800	Weak transcription	HSMMtube	muscle
34	chr5:95075000-95082800	Weak transcription	Fetal Thymus	thymus
35	chr5:95075000-95084800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:95075000-95084800	Weak transcription	Fetal Kidney	kidney
37	chr5:95075000-95086200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:95075000-95086400	Weak transcription	GM12878-XiMat	blood
39	chr5:95075000-95086400	Weak transcription	HUVEC	blood vessel
40	chr5:95075000-95088000	Weak transcription	Fetal Brain Male	brain
41	chr5:95075200-95079000	Weak transcription	Fetal Heart	heart
42	chr5:95075200-95080600	Weak transcription	NH-A	brain
43	chr5:95075200-95081000	Strong transcription	Fetal Intestine Small	intestine
44	chr5:95075200-95084600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr5:95075200-95111800	Weak transcription	Psoas Muscle	Psoas
46	chr5:95075400-95079000	Weak transcription	Liver	Liver
47	chr5:95075400-95079000	Weak transcription	Right Atrium	heart
48	chr5:95075400-95080800	Weak transcription	Hela-S3	cervix
49	chr5:95075400-95083000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr5:95075600-95079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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