Variant report

Variant	rs6556902
Chromosome Location	chr5:95461137-95461138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10037565	1.00[AMR][1000 genomes]
rs10059863	1.00[MEX][hapmap]
rs4544841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58611321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6864725	1.00[AMR][1000 genomes]
rs73771897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773918	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
5	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95451400-95461200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:95456200-95461200	Weak transcription	HSMM	muscle
3	chr5:95458800-95465800	Enhancers	NHEK	skin
4	chr5:95459000-95461400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:95459800-95462000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:95459800-95465200	Enhancers	HMEC	breast
7	chr5:95460000-95461800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:95460200-95461200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:95460200-95462000	Enhancers	Osteobl	bone
10	chr5:95460400-95461200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:95460400-95462200	Enhancers	Fetal Heart	heart
12	chr5:95460600-95461200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:95460600-95461800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:95460600-95462200	Flanking Active TSS	HepG2	liver
15	chr5:95460800-95461600	Enhancers	Fetal Intestine Small	intestine
16	chr5:95460800-95461600	Enhancers	Pancreas	Pancrea
17	chr5:95460800-95461600	Flanking Active TSS	A549	lung
18	chr5:95460800-95461800	Enhancers	Colon Smooth Muscle	Colon
19	chr5:95460800-95461800	Enhancers	Fetal Intestine Large	intestine
20	chr5:95460800-95461800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr5:95460800-95461800	Enhancers	Stomach Mucosa	stomach
22	chr5:95460800-95462000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:95460800-95462000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:95460800-95462000	Flanking Active TSS	Liver	Liver
25	chr5:95461000-95461200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:95461000-95461200	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr5:95461000-95461400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr5:95461000-95461600	Active TSS	Aorta	Aorta
29	chr5:95461000-95461600	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr5:95461000-95461600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr5:95461000-95461800	Active TSS	Right Atrium	heart
32	chr5:95461000-95462000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:95461000-95462000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:95461000-95462000	Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links