Variant report

Variant	rs6557033
Chromosome Location	chr5:97444665-97444666
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10042528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042531	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4242238	1.00[AMR][1000 genomes]
rs4326169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4354070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4412130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4490612	1.00[AMR][1000 genomes]
rs4869397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6557034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6557035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6557046	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6891842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7445465	0.81[AFR][1000 genomes]
rs7735390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034472	chr5:97357264-97523965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv599076	chr5:97423476-97478555	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv32866	chr5:97424721-97463865	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2753887	chr5:97439630-97532740	Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2757123	chr5:97442526-97616089	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97439800-97445000	Enhancers	NHDF-Ad	bronchial
2	chr5:97440200-97447800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:97440800-97445000	Enhancers	HSMM	muscle
4	chr5:97442000-97445000	Enhancers	Osteobl	bone
5	chr5:97442200-97446400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:97442200-97447600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:97442600-97445000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:97442600-97446000	Weak transcription	Fetal Lung	lung
9	chr5:97443000-97445000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:97443000-97447000	Enhancers	HUVEC	blood vessel
11	chr5:97443200-97444800	Enhancers	NHEK	skin
12	chr5:97443200-97445000	Enhancers	NHLF	lung
13	chr5:97443400-97447800	Enhancers	HMEC	breast
14	chr5:97443600-97446000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:97444000-97444800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:97444400-97444800	Weak transcription	HSMMtube	muscle
17	chr5:97444400-97445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:97444400-97445000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:97444400-97445200	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:97444600-97444800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:97444600-97444800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:97444600-97445000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:97444600-97445200	Weak transcription	Fetal Stomach	stomach
24	chr5:97444600-97445400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr5:97444600-97445400	Flanking Active TSS	NH-A	brain

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