Variant report

Variant	rs6558861
Chromosome Location	chr8:4194330-4194331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10092995	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10103663	1.00[CEU][hapmap]
rs11986849	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11990908	1.00[TSI][hapmap]
rs11993789	1.00[CEU][hapmap]
rs12334725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12334940	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17069759	1.00[CEU][hapmap]
rs17069855	1.00[MEX][hapmap]
rs17069952	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17069980	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2067652	1.00[CEU][hapmap]
rs28403892	0.93[AFR][1000 genomes]
rs28438650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28662857	1.00[EUR][1000 genomes]
rs6558862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6981425	1.00[EUR][1000 genomes]
rs6995386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997132	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7464236	1.00[CEU][hapmap]
rs779109	1.00[CEU][hapmap]
rs7820448	1.00[EUR][1000 genomes]
rs7824165	1.00[CEU][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv438021	chr8:4185750-4196180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4189800-4194400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:4189800-4195400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:4190000-4194400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:4190000-4195400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:4190000-4199600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:4191400-4194600	Weak transcription	Liver	Liver
7	chr8:4194000-4194800	Enhancers	Gastric	stomach
8	chr8:4194200-4194800	Enhancers	Stomach Mucosa	stomach
9	chr8:4194200-4195200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:4194200-4195800	Enhancers	Fetal Intestine Small	intestine
11	chr8:4194200-4202600	Weak transcription	Pancreas	Pancrea

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