Variant report

Variant	rs655954
Chromosome Location	chr11:104748626-104748627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:104747404..104750313-chr11:104761050..104763216,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12274726	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12282839	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12801346	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2194997	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34768867	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35513500	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35524338	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs474283	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4755061	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs483194	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs486544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548054	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs609552	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs642603	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66525944	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7925262	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7933503	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7939262	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs890451	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs890452	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv8869	chr11:104724605-104760037	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3465886	chr11:104724810-104759731	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3465897	chr11:104724823-104759731	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3465908	chr11:104724823-104759731	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3693098	chr11:104728524-104759546	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104744200-104761000	Weak transcription	Aorta	Aorta
2	chr11:104745400-104749200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:104745600-104768600	Weak transcription	Left Ventricle	heart
4	chr11:104746000-104749000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:104746400-104749200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:104746600-104749000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:104746600-104749000	Enhancers	GM12878-XiMat	blood
8	chr11:104746600-104749200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr11:104747400-104749000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:104747800-104748800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:104747800-104749200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr11:104748000-104749000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:104748000-104749000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:104748000-104749000	Enhancers	Dnd41	blood
15	chr11:104748000-104749200	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:104748000-104749200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:104748000-104749200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr11:104748000-104749200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:104748000-104749400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:104748000-104751000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:104748200-104749000	Enhancers	Primary T cells from cord blood	blood
22	chr11:104748400-104748800	Enhancers	Primary B cells from cord blood	blood
23	chr11:104748600-104748800	Enhancers	Sigmoid Colon	Sigmoid Colon

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