Variant report

Variant	rs656012
Chromosome Location	chr6:119475567-119475568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119467741..119471194-chr6:119473537..119476298,6	K562	blood:
2	chr6:119468724..119471407-chr6:119473648..119476753,3	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12190611	0.88[EUR][1000 genomes]
rs1891540	0.88[EUR][1000 genomes]
rs2206031	0.83[ASN][1000 genomes]
rs2558	0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs601575	0.85[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs608541	0.88[EUR][1000 genomes]
rs611211	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs624829	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs638368	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs660682	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs666655	0.89[EUR][1000 genomes]
rs678974	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs682949	0.96[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs683488	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6910397	0.96[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs6928078	0.83[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs6934752	0.96[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs6935092	0.87[EUR][1000 genomes]
rs733259	0.96[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs733260	0.88[EUR][1000 genomes]
rs7775389	0.96[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs916471	0.80[ASN][1000 genomes]
rs9387637	0.96[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs9398502	0.88[EUR][1000 genomes]
rs9398503	0.88[EUR][1000 genomes]
rs9398505	0.82[ASN][1000 genomes]
rs9401130	0.96[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119469800-119476800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:119470200-119482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:119471200-119478200	Weak transcription	NHDF-Ad	bronchial
4	chr6:119472800-119477800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:119474800-119479800	Weak transcription	HepG2	liver

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