Variant report

Variant	rs6560514
Chromosome Location	chr9:79015381-79015382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79008991..79011604-chr9:79014498..79020251,6	K562	blood:
2	chr9:79007886..79011336-chr9:79013243..79018063,7	MCF-7	breast:
3	chr9:79014853..79017600-chr9:79074234..79077178,2	MCF-7	breast:
4	chr9:79009095..79011288-chr9:79015114..79018669,3	K562	blood:

Variant related genes	Relation type
ENSG00000135002	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11144877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2002423	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv972402	chr9:79012721-79015493	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79010200-79017000	Weak transcription	NH-A	brain
2	chr9:79010600-79015400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:79010600-79015400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:79010600-79015400	Weak transcription	HMEC	breast
5	chr9:79010600-79016600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:79010600-79016600	Weak transcription	NHLF	lung
7	chr9:79010600-79017000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:79010600-79017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:79010600-79018000	Weak transcription	HUVEC	blood vessel
10	chr9:79010600-79018400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:79010600-79019400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:79010800-79015400	Weak transcription	A549	lung
13	chr9:79010800-79018400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:79010800-79018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:79010800-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:79010800-79018400	Weak transcription	NHDF-Ad	bronchial
17	chr9:79011000-79018400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:79011000-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:79011000-79018400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:79011200-79018000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr9:79011200-79018400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:79011400-79016800	Weak transcription	Fetal Intestine Small	intestine
23	chr9:79013600-79015400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:79014800-79015600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:79014800-79016000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:79015000-79015400	Enhancers	GM12878-XiMat	blood
27	chr9:79015000-79016000	Enhancers	Hela-S3	cervix
28	chr9:79015200-79015600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:79015200-79015600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:79015200-79015800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr9:79015200-79016000	Enhancers	NHEK	skin
32	chr9:79015200-79016400	Enhancers	Placenta	Placenta
33	chr9:79015200-79016800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:79015200-79017200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:79015200-79019000	Enhancers	HepG2	liver
36	chr9:79015200-79019600	Enhancers	Rectal Mucosa Donor 31	rectum

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