Variant report

Variant	rs6561487
Chromosome Location	chr13:49521542-49521543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11148129	0.87[ASN][1000 genomes]
rs11148130	0.91[ASN][1000 genomes]
rs183078	0.99[EUR][1000 genomes]
rs2026027	0.91[ASN][1000 genomes]
rs2596242	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs357678	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs357681	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs357682	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3930535	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4313714	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4341668	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4476073	0.90[ASN][1000 genomes]
rs4556695	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4941632	0.91[ASN][1000 genomes]
rs516801	0.97[EUR][1000 genomes]
rs516834	0.97[EUR][1000 genomes]
rs590263	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs653016	0.89[EUR][1000 genomes]
rs7321676	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7324415	0.91[ASN][1000 genomes]
rs7331168	0.91[ASN][1000 genomes]
rs7337877	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs766776	0.86[ASN][1000 genomes]
rs7990531	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7993904	0.86[ASN][1000 genomes]
rs9316423	0.83[ASN][1000 genomes]
rs9526506	0.87[ASN][1000 genomes]
rs9535114	0.91[ASN][1000 genomes]
rs9535115	0.90[ASN][1000 genomes]
rs9535117	0.91[ASN][1000 genomes]
rs9535118	0.91[ASN][1000 genomes]
rs9535119	0.91[ASN][1000 genomes]
rs9568135	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9568136	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9568139	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49514800-49524000	Weak transcription	Placenta	Placenta
2	chr13:49521000-49526000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:49521200-49521600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:49521200-49521800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:49521400-49522200	Enhancers	Stomach Mucosa	stomach
6	chr13:49521400-49524000	Weak transcription	Fetal Intestine Small	intestine
7	chr13:49521400-49524800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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