Variant report

Variant	rs6561625
Chromosome Location	chr13:51814527-51814528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51812537..51814566-chr13:51816955..51818623,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4942983	0.90[AFR][1000 genomes]
rs7322194	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6561625	DHRS12	cis	cerebellum	SCAN

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51799800-51818200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51805200-51825600	Weak transcription	Aorta	Aorta
3	chr13:51808000-51821200	Enhancers	Brain Substantia Nigra	brain
4	chr13:51808400-51821400	Enhancers	Fetal Heart	heart
5	chr13:51808600-51820000	Weak transcription	Fetal Brain Female	brain
6	chr13:51808800-51816400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:51809000-51818200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:51810000-51818200	Weak transcription	Brain Germinal Matrix	brain
9	chr13:51810200-51814800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:51810200-51818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:51810200-51820200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:51810400-51814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:51810400-51816400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:51810400-51818000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:51810400-51820000	Weak transcription	Fetal Brain Male	brain
16	chr13:51810600-51815000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr13:51810600-51815000	Weak transcription	Adipose Nuclei	Adipose
18	chr13:51810600-51818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:51810800-51814600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:51810800-51814600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:51811000-51814600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:51811400-51814600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr13:51812000-51816000	Enhancers	Brain Angular Gyrus	brain
24	chr13:51812400-51815000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:51812600-51814600	Weak transcription	Right Atrium	heart
26	chr13:51812600-51820600	Weak transcription	Right Ventricle	heart
27	chr13:51812600-51821000	Weak transcription	Spleen	Spleen
28	chr13:51813200-51814800	Weak transcription	Fetal Lung	lung
29	chr13:51813200-51816000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:51813200-51822600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:51813600-51821200	Enhancers	Brain Cingulate Gyrus	brain
32	chr13:51813800-51814800	Enhancers	Rectal Smooth Muscle	rectum
33	chr13:51813800-51816800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr13:51813800-51817400	Enhancers	Brain Hippocampus Middle	brain
35	chr13:51813800-51818600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr13:51814000-51817000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr13:51814000-51817200	Enhancers	Stomach Smooth Muscle	stomach
38	chr13:51814000-51817600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr13:51814000-51819000	Enhancers	Colon Smooth Muscle	Colon
40	chr13:51814000-51820600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr13:51814200-51814600	Weak transcription	Left Ventricle	heart
42	chr13:51814200-51815000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr13:51814200-51815600	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr13:51814200-51817400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:51814200-51820200	Enhancers	Brain Anterior Caudate	brain
46	chr13:51814400-51814600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:51814400-51817400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr13:51814400-51817600	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr13:51814400-51817800	Enhancers	Fetal Stomach	stomach
50	chr13:51814400-51819000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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