Variant report
| Variant | rs6562178 |
|---|---|
| Chromosome Location | chr13:61996976-61996977 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs4277248 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4321085 | 0.83[EUR][1000 genomes] |
| rs4499128 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7325869 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8002097 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9528340 | 0.87[EUR][1000 genomes] |
| rs9539174 | 0.87[EUR][1000 genomes] |
| rs9539176 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9539177 | 0.90[EUR][1000 genomes] |
| rs9539178 | 0.90[EUR][1000 genomes] |
| rs9563920 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9563921 | 0.90[EUR][1000 genomes] |
| rs9563922 | 0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9563923 | 0.90[EUR][1000 genomes] |
| rs9563924 | 0.90[EUR][1000 genomes] |
| rs9563925 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9570582 | 0.90[EUR][1000 genomes] |
| rs9570584 | 0.91[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9570585 | 0.90[EUR][1000 genomes] |
| rs9570586 | 0.90[EUR][1000 genomes] |
| rs9570587 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9570588 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9570589 | 0.90[EUR][1000 genomes] |
| rs9570590 | 0.90[EUR][1000 genomes] |
| rs9570591 | 0.90[EUR][1000 genomes] |
| rs9570593 | 0.90[EUR][1000 genomes] |
| rs9598274 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900245 | chr13:61873379-62057698 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948661 | chr13:61906251-62179649 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv832628 | chr13:61985540-62153692 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61995400-61997400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
